Allowed options: --help produce help message --version produce version message --srf_file arg SRF file name --type arg (=1) sequencing type [OPTIONAL] --sms_file arg SMS file name [OPTIONAL] --xml_file arg XML file name [OPTIONAL] --clipping_roi_file arg Clipping ROI file name [OPTIONAL] --compress arg (=0) compress output [OPTIONAL] --description arg description for SMS file [OPTIONAL]