Synopsis:
download_srf.pl [OPTIONS] COMMON_PARAMETERS [--intermediate=0] FLOWCELL_CHANNEL_SPECIFICATION
download_srf.pl [OPTIONS] COMMON_PARAMETERS --intermediate=1
download_srf.pl --help
Required Common Parameters:
--instrument_name=arg instrument name (e.g. P3)
--instrument_domain_name=arg domain name (or IP address) of instrument system server (e.g. P3.hbsc.local or
122.12.10.103)
--run_integer_id=arg run integer id (e.g. 10048)
--run_id=arg the datetime-like run id (e.g. 2009-03-11T17_14_13)
DataSet Specification (for intermediate SRF download):
Required:
--intermediate=1 download intermedite (during run) SRF file consisting of QC imaging positions only
[DEFAULT: 0]
DataSet Specification (for normal SRF download):
Required:
--flow_cell_1_barcode=arg barcode for flowcell 1 [OPTIONAL if only flowcell 2 channels are requested]
--flow_cell_2_barcode=arg barcode for flowcell 2 [OPTIONAL if only flowcell 1 channels are requested]
Optional:
--flow_cell_1_channels=arg comma-delimited set of channels for flow cell 1 (if any)
[DEFAULT: all (none if --flow_cell_2_channels specified]
--flow_cell_2_channels=arg comma-delimited set of channels for flow cell 2 (if any)
[DEFAULT: all (none if --flow_cell_1_channels specified]
Options:
--force=[0|1] overwrite existing files [DEFAULT: 1]
--output_directory=arg output directory for downloaded SRF files [DEFAULT: current working directory]
General Options:
--verbose=arg verbocity level [DEFAULT: 0]
--debug=arg debug flag [0|1] [DEFAULT: 0]
--help print this help message